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Compositional Flows for 3D Molecule and Synthesis Pathway Co-design

  • Compositional Generative Flows (CGFlow) is a framework introduced to generate objects in compositional steps while modeling continuous states.
  • It is an extension of flow matching interpolation process and utilizes the theoretical foundations of generative flow networks (GFlowNets).
  • CGFlow is applied in synthesizable drug design to jointly design the molecule's synthetic pathway with its 3D binding pose.
  • The method achieves state-of-the-art binding affinity and improved sampling efficiency compared to a 2D synthesis-based baseline.

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