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Image Credit: Arxiv

Learning Flexible Forward Trajectories for Masked Molecular Diffusion

  • Researchers have introduced Masked Element-wise Learnable Diffusion (MELD) to improve the performance of Masked diffusion models (MDMs) in molecular generation.
  • Standard MDMs were found to severely degrade performance due to a state-clashing problem where forward diffusion causes distinct molecules to collapse into a common state.
  • MELD orchestrates per-element corruption trajectories using a noise scheduling network to prevent collision between distinct molecular graphs.
  • Experiments show that MELD significantly enhances generation quality, increasing the chemical validity of MDMs on ZINC250K benchmark from 15% to 93% and achieving state-of-the-art results in conditional generation tasks.

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