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scE$^2$TM:...
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Arxiv

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Image Credit: Arxiv

scE$^2$TM: Toward Interpretable Single-Cell Embedding via Topic Modeling

  • Advances in sequencing technologies have allowed exploration of cellular heterogeneity at single-cell resolution.
  • Interpretability has become important alongside the increase in complexity of deep learning models.
  • A new model called scE2TM combines topic modeling for interpretable single-cell embedding learning.
  • scE2TM provides high-quality cell embeddings, improves clustering performance, and offers strong interpretation with external biological knowledge.

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